| application / __init__.py |
(no function) |
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38 |
10 |
0 |
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74% |
| application / config.py |
(no function) |
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25 |
4 |
0 |
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84% |
| application / image_reference / __init__.py |
(no function) |
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3 |
0 |
0 |
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100% |
| application / image_reference / routes.py |
image_reference_page |
|
5 |
5 |
0 |
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0% |
| application / image_reference / routes.py |
add_image_reference |
|
4 |
4 |
0 |
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0% |
| application / image_reference / routes.py |
(no function) |
|
7 |
0 |
0 |
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100% |
| application / image_review / __init__.py |
(no function) |
|
8 |
0 |
0 |
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100% |
| application / image_review / external_review / __init__.py |
(no function) |
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3 |
0 |
0 |
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100% |
| application / image_review / external_review / comment_processor.py |
CommentProcessor.__init__ |
|
8 |
8 |
0 |
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| application / image_review / external_review / comment_processor.py |
CommentProcessor.load_comments |
|
143 |
143 |
0 |
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0% |
| application / image_review / external_review / comment_processor.py |
(no function) |
|
13 |
0 |
0 |
|
100% |
| application / image_review / external_review / routes.py |
get_external_review |
|
53 |
53 |
0 |
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0% |
| application / image_review / external_review / routes.py |
add_external_review |
|
10 |
10 |
0 |
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0% |
| application / image_review / external_review / routes.py |
add_external_review.add_vars_or_tator_comment |
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11 |
11 |
0 |
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0% |
| application / image_review / external_review / routes.py |
delete_external_review |
|
12 |
12 |
0 |
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0% |
| application / image_review / external_review / routes.py |
reviewers |
|
1 |
1 |
0 |
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0% |
| application / image_review / external_review / routes.py |
update_reviewer_info |
|
19 |
19 |
0 |
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0% |
| application / image_review / external_review / routes.py |
delete_reviewer |
|
7 |
7 |
0 |
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| application / image_review / external_review / routes.py |
(no function) |
|
20 |
0 |
0 |
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100% |
| application / image_review / tator / __init__.py |
(no function) |
|
3 |
0 |
0 |
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100% |
| application / image_review / tator / routes.py |
tator_image_review |
|
32 |
32 |
0 |
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0% |
| application / image_review / tator / routes.py |
(no function) |
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7 |
0 |
0 |
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100% |
| application / image_review / tator / tator_localization_processor.py |
Section.__init__ |
|
6 |
6 |
0 |
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| application / image_review / tator / tator_localization_processor.py |
TatorLocalizationProcessor.__init__ |
|
7 |
7 |
0 |
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| application / image_review / tator / tator_localization_processor.py |
TatorLocalizationProcessor.load_phylogeny |
|
5 |
5 |
0 |
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0% |
| application / image_review / tator / tator_localization_processor.py |
TatorLocalizationProcessor.save_phylogeny |
|
7 |
7 |
0 |
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0% |
| application / image_review / tator / tator_localization_processor.py |
TatorLocalizationProcessor.fetch_worms_phylogeny |
|
20 |
20 |
0 |
|
0% |
| application / image_review / tator / tator_localization_processor.py |
TatorLocalizationProcessor.fetch_localizations |
|
6 |
6 |
0 |
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0% |
| application / image_review / tator / tator_localization_processor.py |
TatorLocalizationProcessor.process_records |
|
82 |
82 |
0 |
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0% |
| application / image_review / tator / tator_localization_processor.py |
TatorLocalizationProcessor.process_records.collect_localizations |
|
1 |
1 |
0 |
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0% |
| application / image_review / tator / tator_localization_processor.py |
TatorLocalizationProcessor.process_records.first_if_all_same |
|
1 |
1 |
0 |
|
0% |
| application / image_review / tator / tator_localization_processor.py |
TatorLocalizationProcessor.process_records.is_populated |
|
3 |
3 |
0 |
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0% |
| application / image_review / tator / tator_localization_processor.py |
(no function) |
|
23 |
0 |
0 |
|
100% |
| application / image_review / vars / __init__.py |
(no function) |
|
3 |
0 |
0 |
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100% |
| application / image_review / vars / routes.py |
view_images |
|
16 |
16 |
0 |
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0% |
| application / image_review / vars / routes.py |
(no function) |
|
6 |
0 |
0 |
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100% |
| application / image_review / vars / vars_annotation_processor.py |
VarsAnnotationProcessor.__init__ |
|
10 |
0 |
0 |
|
100% |
| application / image_review / vars / vars_annotation_processor.py |
VarsAnnotationProcessor.process_sequences |
|
12 |
12 |
0 |
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| application / image_review / vars / vars_annotation_processor.py |
VarsAnnotationProcessor.load_phylogeny |
|
5 |
1 |
0 |
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80% |
| application / image_review / vars / vars_annotation_processor.py |
VarsAnnotationProcessor.save_phylogeny |
|
7 |
7 |
0 |
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| application / image_review / vars / vars_annotation_processor.py |
VarsAnnotationProcessor.fetch_media |
|
8 |
0 |
0 |
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100% |
| application / image_review / vars / vars_annotation_processor.py |
VarsAnnotationProcessor.fetch_vars_phylogeny |
|
17 |
1 |
0 |
|
94% |
| application / image_review / vars / vars_annotation_processor.py |
VarsAnnotationProcessor.get_image_url |
|
8 |
0 |
0 |
|
100% |
| application / image_review / vars / vars_annotation_processor.py |
VarsAnnotationProcessor.get_video |
|
10 |
1 |
0 |
|
90% |
| application / image_review / vars / vars_annotation_processor.py |
VarsAnnotationProcessor.process_working_records |
|
26 |
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0 |
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100% |
| application / image_review / vars / vars_annotation_processor.py |
VarsAnnotationProcessor.sort_records |
|
5 |
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0 |
|
100% |
| application / image_review / vars / vars_annotation_processor.py |
(no function) |
|
18 |
0 |
0 |
|
100% |
| application / main.py |
favicon |
|
1 |
1 |
0 |
|
0% |
| application / main.py |
index |
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13 |
13 |
0 |
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| application / main.py |
index.fetch_json |
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| application / main.py |
video |
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2 |
0 |
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0% |
| application / main.py |
page_not_found |
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0 |
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| application / main.py |
server_error |
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| application / main.py |
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16 |
0 |
0 |
|
100% |
| application / qaqc / __init__.py |
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|
6 |
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0 |
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| application / qaqc / tator / __init__.py |
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3 |
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0 |
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| application / qaqc / tator / routes.py |
tator_qaqc_checklist |
|
45 |
45 |
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| application / qaqc / tator / routes.py |
patch_tator_qaqc_checklist |
|
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| application / qaqc / tator / routes.py |
tator_qaqc |
|
113 |
113 |
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| application / qaqc / tator / routes.py |
attracted_list |
|
2 |
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0 |
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| application / qaqc / tator / routes.py |
add_attracted |
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5 |
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| application / qaqc / tator / routes.py |
update_attracted |
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| application / qaqc / tator / routes.py |
delete_attracted |
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| application / qaqc / tator / routes.py |
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0 |
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| application / qaqc / tator / tator_qaqc_processor.py |
TatorQaqcProcessor.__init__ |
|
1 |
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| application / qaqc / tator / tator_qaqc_processor.py |
TatorQaqcProcessor.check_names_accepted |
|
37 |
37 |
0 |
|
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| application / qaqc / tator / tator_qaqc_processor.py |
TatorQaqcProcessor.check_missing_qualifier |
|
7 |
7 |
0 |
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| application / qaqc / tator / tator_qaqc_processor.py |
TatorQaqcProcessor.check_stet_reason |
|
8 |
8 |
0 |
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| application / qaqc / tator / tator_qaqc_processor.py |
TatorQaqcProcessor.check_attracted_not_attracted |
|
15 |
15 |
0 |
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| application / qaqc / tator / tator_qaqc_processor.py |
TatorQaqcProcessor.check_same_name_qualifier |
|
18 |
18 |
0 |
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| application / qaqc / tator / tator_qaqc_processor.py |
TatorQaqcProcessor.check_non_target_not_attracted |
|
10 |
10 |
0 |
|
0% |
| application / qaqc / tator / tator_qaqc_processor.py |
TatorQaqcProcessor.check_exists_in_image_references |
|
18 |
18 |
0 |
|
0% |
| application / qaqc / tator / tator_qaqc_processor.py |
TatorQaqcProcessor.get_all_tentative_ids |
|
27 |
27 |
0 |
|
0% |
| application / qaqc / tator / tator_qaqc_processor.py |
TatorQaqcProcessor.get_all_notes_and_remarks |
|
18 |
18 |
0 |
|
0% |
| application / qaqc / tator / tator_qaqc_processor.py |
TatorQaqcProcessor.get_re_examined |
|
7 |
7 |
0 |
|
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| application / qaqc / tator / tator_qaqc_processor.py |
TatorQaqcProcessor.get_unique_taxa |
|
30 |
30 |
0 |
|
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| application / qaqc / tator / tator_qaqc_processor.py |
TatorQaqcProcessor.get_max_n |
|
22 |
22 |
0 |
|
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| application / qaqc / tator / tator_qaqc_processor.py |
TatorQaqcProcessor.get_tofa |
|
46 |
46 |
0 |
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0% |
| application / qaqc / tator / tator_qaqc_processor.py |
TatorQaqcProcessor.get_summary |
|
4 |
4 |
0 |
|
0% |
| application / qaqc / tator / tator_qaqc_processor.py |
TatorQaqcProcessor.download_image_guide |
|
67 |
67 |
0 |
|
0% |
| application / qaqc / tator / tator_qaqc_processor.py |
TatorQaqcProcessor.fetch_start_times |
|
27 |
27 |
0 |
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0% |
| application / qaqc / tator / tator_qaqc_processor.py |
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|
33 |
0 |
0 |
|
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| application / qaqc / vars / __init__.py |
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|
3 |
0 |
0 |
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| application / qaqc / vars / routes.py |
vars_qaqc_checklist |
|
15 |
15 |
0 |
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| application / qaqc / vars / routes.py |
get_sequence_counts |
|
52 |
52 |
0 |
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| application / qaqc / vars / routes.py |
patch_vars_qaqc_checklist |
|
7 |
7 |
0 |
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| application / qaqc / vars / routes.py |
vars_qaqc |
|
61 |
61 |
0 |
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| application / qaqc / vars / routes.py |
qaqc_quick |
|
7 |
7 |
0 |
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| application / qaqc / vars / routes.py |
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|
15 |
0 |
0 |
|
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| application / qaqc / vars / vars_qaqc_processor.py |
VarsQaqcProcessor.__init__ |
|
3 |
0 |
0 |
|
100% |
| application / qaqc / vars / vars_qaqc_processor.py |
VarsQaqcProcessor.fetch_annotations |
|
9 |
0 |
0 |
|
100% |
| application / qaqc / vars / vars_qaqc_processor.py |
VarsQaqcProcessor.find_duplicate_associations |
|
16 |
1 |
0 |
|
94% |
| application / qaqc / vars / vars_qaqc_processor.py |
VarsQaqcProcessor.find_missing_s1 |
|
8 |
0 |
0 |
|
100% |
| application / qaqc / vars / vars_qaqc_processor.py |
VarsQaqcProcessor.find_identical_s1_s2 |
|
14 |
1 |
0 |
|
93% |
| application / qaqc / vars / vars_qaqc_processor.py |
VarsQaqcProcessor.find_duplicate_s2 |
|
15 |
1 |
0 |
|
93% |
| application / qaqc / vars / vars_qaqc_processor.py |
VarsQaqcProcessor.find_missing_upon_substrate |
|
21 |
1 |
0 |
|
95% |
| application / qaqc / vars / vars_qaqc_processor.py |
VarsQaqcProcessor.find_mismatched_substrates |
|
35 |
4 |
0 |
|
89% |
| application / qaqc / vars / vars_qaqc_processor.py |
VarsQaqcProcessor.find_missing_upon |
|
7 |
0 |
0 |
|
100% |
| application / qaqc / vars / vars_qaqc_processor.py |
VarsQaqcProcessor.get_num_records_missing_ancillary_data |
|
6 |
0 |
0 |
|
100% |
| application / qaqc / vars / vars_qaqc_processor.py |
VarsQaqcProcessor.find_missing_ancillary_data |
|
5 |
0 |
0 |
|
100% |
| application / qaqc / vars / vars_qaqc_processor.py |
VarsQaqcProcessor.find_id_refs_different_concept_name |
|
19 |
1 |
0 |
|
95% |
| application / qaqc / vars / vars_qaqc_processor.py |
VarsQaqcProcessor.find_id_refs_conflicting_associations |
|
52 |
10 |
0 |
|
81% |
| application / qaqc / vars / vars_qaqc_processor.py |
VarsQaqcProcessor.find_blank_associations |
|
8 |
1 |
0 |
|
88% |
| application / qaqc / vars / vars_qaqc_processor.py |
VarsQaqcProcessor.find_suspicious_hosts |
|
8 |
1 |
0 |
|
88% |
| application / qaqc / vars / vars_qaqc_processor.py |
VarsQaqcProcessor.find_missing_expected_association |
|
19 |
1 |
1 |
|
95% |
| application / qaqc / vars / vars_qaqc_processor.py |
VarsQaqcProcessor.find_long_host_associate_time_diff |
|
40 |
0 |
0 |
|
100% |
| application / qaqc / vars / vars_qaqc_processor.py |
VarsQaqcProcessor.find_num_bounding_boxes |
|
14 |
0 |
0 |
|
100% |
| application / qaqc / vars / vars_qaqc_processor.py |
VarsQaqcProcessor.find_localizations_without_bounding_boxes |
|
13 |
13 |
0 |
|
0% |
| application / qaqc / vars / vars_qaqc_processor.py |
VarsQaqcProcessor.find_unique_fields |
|
79 |
12 |
0 |
|
85% |
| application / qaqc / vars / vars_qaqc_processor.py |
VarsQaqcProcessor.find_unique_fields.load_dict |
|
6 |
0 |
0 |
|
100% |
| application / qaqc / vars / vars_qaqc_processor.py |
(no function) |
|
25 |
0 |
0 |
|
100% |
| application / tator / __init__.py |
(no function) |
|
3 |
0 |
0 |
|
100% |
| application / tator / routes.py |
tator_login |
|
5 |
5 |
0 |
|
0% |
| application / tator / routes.py |
check_tator_token |
|
8 |
8 |
0 |
|
0% |
| application / tator / routes.py |
tator_logout |
|
2 |
2 |
0 |
|
0% |
| application / tator / routes.py |
tator_sections |
|
39 |
39 |
0 |
|
0% |
| application / tator / routes.py |
tator_sections.should_skip |
|
2 |
2 |
0 |
|
0% |
| application / tator / routes.py |
tator_frame |
|
11 |
11 |
0 |
|
0% |
| application / tator / routes.py |
tator_image |
|
10 |
10 |
0 |
|
0% |
| application / tator / routes.py |
update_tator_localization |
|
12 |
12 |
0 |
|
0% |
| application / tator / routes.py |
update_tator_localization_image |
|
9 |
9 |
0 |
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0% |
| application / tator / routes.py |
(no function) |
|
24 |
0 |
0 |
|
100% |
| application / util / constants.py |
(no function) |
|
4 |
0 |
0 |
|
100% |
| application / util / functions.py |
parse_datetime |
|
3 |
0 |
0 |
|
100% |
| application / util / functions.py |
extract_recorded_datetime |
|
8 |
0 |
0 |
|
100% |
| application / util / functions.py |
get_association |
|
6 |
1 |
0 |
|
83% |
| application / util / functions.py |
format_annotator |
|
3 |
0 |
0 |
|
100% |
| application / util / functions.py |
flatten_taxa_tree |
|
4 |
0 |
0 |
|
100% |
| application / util / functions.py |
(no function) |
|
8 |
0 |
0 |
|
100% |
| application / util / tator_localization_type.py |
(no function) |
|
4 |
0 |
0 |
|
100% |
| application / vars / __init__.py |
(no function) |
|
3 |
0 |
0 |
|
100% |
| application / vars / annosaurus.py |
AuthenticationError.__init__ |
|
1 |
0 |
0 |
|
100% |
| application / vars / annosaurus.py |
JWTAuthentication.__init__ |
|
3 |
0 |
0 |
|
100% |
| application / vars / annosaurus.py |
JWTAuthentication.authorize |
|
8 |
0 |
0 |
|
100% |
| application / vars / annosaurus.py |
JWTAuthentication.authenticate |
|
8 |
0 |
0 |
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100% |
| application / vars / annosaurus.py |
JWTAuthentication._auth_header |
|
1 |
0 |
0 |
|
100% |
| application / vars / annosaurus.py |
Annosaurus.__init__ |
|
1 |
0 |
0 |
|
100% |
| application / vars / annosaurus.py |
Annosaurus.create_association |
|
10 |
0 |
0 |
|
100% |
| application / vars / annosaurus.py |
Annosaurus.update_association |
|
3 |
0 |
0 |
|
100% |
| application / vars / annosaurus.py |
Annosaurus.delete_association |
|
3 |
0 |
0 |
|
100% |
| application / vars / annosaurus.py |
Annosaurus.update_concept_name |
|
3 |
0 |
0 |
|
100% |
| application / vars / annosaurus.py |
Annosaurus.update_annotation_comment |
|
37 |
3 |
0 |
|
92% |
| application / vars / annosaurus.py |
(no function) |
|
17 |
0 |
0 |
|
100% |
| application / vars / routes.py |
get_current_associations |
|
4 |
4 |
0 |
|
0% |
| application / vars / routes.py |
update_annotation |
|
3 |
3 |
0 |
|
0% |
| application / vars / routes.py |
create_association |
|
6 |
6 |
0 |
|
0% |
| application / vars / routes.py |
update_association |
|
4 |
4 |
0 |
|
0% |
| application / vars / routes.py |
delete_association |
|
3 |
3 |
0 |
|
0% |
| application / vars / routes.py |
video_frame |
|
36 |
36 |
0 |
|
0% |
| application / vars / routes.py |
(no function) |
|
18 |
0 |
0 |
|
100% |
| run.py |
(no function) |
|
6 |
6 |
0 |
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0% |
| test / __init__.py |
(no function) |
|
0 |
0 |
0 |
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100% |
| test / conftest.py |
app |
|
2 |
2 |
0 |
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0% |
| test / conftest.py |
client |
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1 |
1 |
0 |
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0% |
| test / conftest.py |
(no function) |
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6 |
0 |
0 |
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100% |
| test / data / vars_responses.py |
(no function) |
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4 |
0 |
0 |
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100% |
| test / data / worms_responses.py |
(no function) |
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2 |
0 |
0 |
|
100% |
| test / test_annosaurus.py |
MockResponse.__init__ |
|
5 |
0 |
0 |
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| test / test_annosaurus.py |
MockResponse.json |
|
51 |
6 |
0 |
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88% |
| test / test_annosaurus.py |
MockResponse.text |
|
1 |
1 |
0 |
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0% |
| test / test_annosaurus.py |
mocked_requests_get |
|
1 |
0 |
0 |
|
100% |
| test / test_annosaurus.py |
mocked_requests_get_404 |
|
1 |
0 |
0 |
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100% |
| test / test_annosaurus.py |
mocked_requests_post |
|
1 |
0 |
0 |
|
100% |
| test / test_annosaurus.py |
mocked_requests_put |
|
1 |
0 |
0 |
|
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| test / test_annosaurus.py |
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