| annotation/annotation_row.py |
AnnotationRow.__init__ |
6 |
0 |
0 |
100% |
| annotation/annotation_row.py |
AnnotationRow.set_simple_static_data |
21 |
0 |
0 |
100% |
| annotation/annotation_row.py |
AnnotationRow.set_ancillary_data |
27 |
0 |
0 |
100% |
| annotation/annotation_row.py |
AnnotationRow.set_sample_id |
1 |
0 |
0 |
100% |
| annotation/annotation_row.py |
AnnotationRow.set_dive_info |
21 |
0 |
0 |
100% |
| annotation/annotation_row.py |
AnnotationRow.set_concept_info |
26 |
3 |
0 |
88% |
| annotation/annotation_row.py |
AnnotationRow.set_media_type |
3 |
0 |
0 |
100% |
| annotation/annotation_row.py |
AnnotationRow.set_id_comments |
9 |
0 |
0 |
100% |
| annotation/annotation_row.py |
AnnotationRow.set_indv_count_and_cat_abundance |
10 |
1 |
0 |
90% |
| annotation/annotation_row.py |
AnnotationRow.set_size |
26 |
8 |
0 |
69% |
| annotation/annotation_row.py |
AnnotationRow.set_condition_comment |
7 |
0 |
0 |
100% |
| annotation/annotation_row.py |
AnnotationRow.set_comments_and_sample |
30 |
2 |
0 |
93% |
| annotation/annotation_row.py |
AnnotationRow.set_cmecs_geo |
1 |
0 |
0 |
100% |
| annotation/annotation_row.py |
AnnotationRow.set_habitat |
32 |
3 |
0 |
91% |
| annotation/annotation_row.py |
AnnotationRow.set_upon |
20 |
10 |
0 |
50% |
| annotation/annotation_row.py |
AnnotationRow.set_id_ref |
7 |
0 |
0 |
100% |
| annotation/annotation_row.py |
AnnotationRow.set_depth |
6 |
0 |
0 |
100% |
| annotation/annotation_row.py |
AnnotationRow.set_temperature |
4 |
0 |
0 |
100% |
| annotation/annotation_row.py |
AnnotationRow.set_salinity |
4 |
0 |
0 |
100% |
| annotation/annotation_row.py |
AnnotationRow.set_oxygen |
4 |
0 |
0 |
100% |
| annotation/annotation_row.py |
AnnotationRow.set_image_paths |
41 |
11 |
0 |
73% |
| annotation/annotation_row.py |
AnnotationRow.set_bounding_box_uuid |
3 |
0 |
0 |
100% |
| annotation/annotation_row.py |
(no function) |
31 |
0 |
0 |
100% |
| annotation/timestamp_processor.py |
TimestampProcessor.__init__ |
4 |
0 |
0 |
100% |
| annotation/timestamp_processor.py |
TimestampProcessor.get_formatted_timestamp |
1 |
0 |
0 |
100% |
| annotation/timestamp_processor.py |
(no function) |
5 |
0 |
0 |
100% |
| concept/concept.py |
Concept.__init__ |
16 |
0 |
0 |
100% |
| concept/concept.py |
Concept.flatten_taxa_tree |
8 |
4 |
0 |
50% |
| concept/concept.py |
Concept.load_from_record |
19 |
10 |
0 |
47% |
| concept/concept.py |
Concept.analyze_concept_name |
49 |
4 |
0 |
92% |
| concept/concept.py |
(no function) |
7 |
0 |
0 |
100% |
| concept/concept_handler.py |
ConceptHandler.__init__ |
6 |
0 |
0 |
100% |
| concept/concept_handler.py |
ConceptHandler.fetch_worms |
3 |
0 |
0 |
100% |
| concept/concept_handler.py |
ConceptHandler.fetch_worms_aphia_record |
34 |
5 |
0 |
85% |
| concept/concept_handler.py |
ConceptHandler.find_parent |
39 |
2 |
0 |
95% |
| concept/concept_handler.py |
ConceptHandler.find_accepted_record |
23 |
4 |
0 |
83% |
| concept/concept_handler.py |
ConceptHandler.check_status |
21 |
2 |
0 |
90% |
| concept/concept_handler.py |
ConceptHandler.check_status.fetch_valid_name_record |
7 |
1 |
0 |
86% |
| concept/concept_handler.py |
ConceptHandler.fetch_worms_taxon_tree |
11 |
1 |
0 |
91% |
| concept/concept_handler.py |
ConceptHandler.fetch_worms_vernaculars |
14 |
1 |
0 |
93% |
| concept/concept_handler.py |
ConceptHandler.fetch_vars_synonyms |
33 |
3 |
0 |
91% |
| concept/concept_handler.py |
(no function) |
16 |
0 |
0 |
100% |
| format_and_output.py |
(no function) |
199 |
199 |
0 |
0% |
| test/__init__.py |
(no function) |
0 |
0 |
0 |
100% |
| test/data_for_tests.py |
(no function) |
17 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_init |
12 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_simple_static_data |
22 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_ancillary_data |
8 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_ancillary_data_missing_location |
8 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_ancillary_data_missing_data |
4 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_sample_id |
3 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_dive_info |
23 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_concept_info_no_descriptors |
23 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_concept_info_descriptors |
23 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_media_type |
5 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_media_type_no_name |
4 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_id_comments_maybe |
6 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_id_comments_other |
6 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_id_comments_none |
4 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_indv_count |
4 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_cat_abundance |
4 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_indv_count_and_cat_abundance_none |
4 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_size |
7 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_size_no_size |
7 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_size_no_match |
7 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_condition_comment |
6 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_condition_comment_none |
5 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_condition_comment_damaged |
5 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_condition_comment_dead |
5 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_comments_simple_remark |
3 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_comments_simple_size |
5 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_comments_simple_sample |
5 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_comments_and_sample_none |
3 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_comments_and_sample |
5 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_comments_old_vars |
5 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_cmecs_geo |
3 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_habitat_s1 |
5 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_habitat_s1_none |
6 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_habitat_s1_fail |
5 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_habitat_one_s2 |
5 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_habitat_multiple_s2 |
5 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_habitat_s2_fail |
5 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_habitat_comment |
7 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_upon_not_creature |
4 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_upon_is_creature |
4 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_upon_no_upon |
4 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_id_ref |
5 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_id_ref_none |
5 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_id_ref_blank |
5 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_depth |
7 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_depth_missing |
7 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_temperature |
5 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_temperature_none |
5 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_salinity |
5 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_salinity_none |
5 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_oxygen |
5 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_oxygen_none |
5 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_image_paths_one_no_hl |
4 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_image_paths_one_hl_best |
4 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_image_paths_one_hl_dense |
4 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_image_paths_multiple |
4 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_old_vars_image_paths |
4 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_bounding_box_uuid_single |
3 |
0 |
0 |
100% |
| test/test_annotation_row.py |
TestAnnotationRow.test_set_bounding_box_uuid_none |
3 |
0 |
0 |
100% |
| test/test_annotation_row.py |
(no function) |
64 |
0 |
0 |
100% |
| test/test_concept.py |
TestConcept.test_init |
16 |
0 |
0 |
100% |
| test/test_concept.py |
TestConcept.test_flatten_tree |
3 |
0 |
0 |
100% |
| test/test_concept.py |
TestConcept.test_analyze_concept_name_simple |
6 |
0 |
0 |
100% |
| test/test_concept.py |
TestConcept.test_analyze_concept_name_cf_end |
6 |
0 |
0 |
100% |
| test/test_concept.py |
TestConcept.test_analyze_concept_name_slash |
6 |
0 |
0 |
100% |
| test/test_concept.py |
TestConcept.test_analyze_concept_name_cf_mid |
6 |
0 |
0 |
100% |
| test/test_concept.py |
TestConcept.test_analyze_concept_name_sp_one |
7 |
0 |
0 |
100% |
| test/test_concept.py |
TestConcept.test_analyze_concept_name_sp_two |
7 |
0 |
0 |
100% |
| test/test_concept.py |
TestConcept.test_analyze_concept_name_nr_one |
6 |
0 |
0 |
100% |
| test/test_concept.py |
TestConcept.test_analyze_concept_name_nr_two |
6 |
0 |
0 |
100% |
| test/test_concept.py |
TestConcept.test_analyze_concept_name_aff_one |
6 |
0 |
0 |
100% |
| test/test_concept.py |
TestConcept.test_analyze_concept_name_aff_two |
6 |
0 |
0 |
100% |
| test/test_concept.py |
TestConcept.test_analyze_concept_name_new_sp |
7 |
0 |
0 |
100% |
| test/test_concept.py |
TestConcept.test_analyze_concept_name_new_sub_sp |
7 |
0 |
0 |
100% |
| test/test_concept.py |
TestConcept.test_analyze_concept_name_new_gen |
7 |
0 |
0 |
100% |
| test/test_concept.py |
TestConcept.test_load_from_record |
12 |
0 |
0 |
100% |
| test/test_concept.py |
(no function) |
20 |
0 |
0 |
100% |
| test/test_concept_handler.py |
MockResponse.__init__ |
8 |
0 |
0 |
100% |
| test/test_concept_handler.py |
MockResponse.json |
40 |
3 |
0 |
92% |
| test/test_concept_handler.py |
mocked_requests_get |
1 |
0 |
0 |
100% |
| test/test_concept_handler.py |
TestConceptHandler.test_init |
6 |
0 |
0 |
100% |
| test/test_concept_handler.py |
TestConceptHandler.test_fetch_worms_aphia_record_simple |
7 |
0 |
0 |
100% |
| test/test_concept_handler.py |
TestConceptHandler.test_fetch_worms_aphia_record_egg |
10 |
0 |
0 |
100% |
| test/test_concept_handler.py |
TestConceptHandler.test_fetch_worms_aphia_record_no_match |
4 |
0 |
0 |
100% |
| test/test_concept_handler.py |
TestConceptHandler.test_fetch_worms_aphia_record_extra_bits |
7 |
0 |
0 |
100% |
| test/test_concept_handler.py |
TestConceptHandler.test_find_parent_simple |
3 |
0 |
0 |
100% |
| test/test_concept_handler.py |
TestConceptHandler.test_find_parent_simple_fail |
3 |
0 |
0 |
100% |
| test/test_concept_handler.py |
TestConceptHandler.test_find_parent_slash_name |
3 |
0 |
0 |
100% |
| test/test_concept_handler.py |
TestConceptHandler.test_find_parent_slash_name_fail |
3 |
0 |
0 |
100% |
| test/test_concept_handler.py |
TestConceptHandler.test_find_accepted_record |
7 |
0 |
0 |
100% |
| test/test_concept_handler.py |
TestConceptHandler.test_find_accepted_record_no_match |
7 |
0 |
0 |
100% |
| test/test_concept_handler.py |
TestConceptHandler.test_check_status_accepted |
6 |
0 |
0 |
100% |
| test/test_concept_handler.py |
TestConceptHandler.test_check_status_unaccepted |
7 |
0 |
0 |
100% |
| test/test_concept_handler.py |
TestConceptHandler.test_check_status_other_same_valid_name |
6 |
0 |
0 |
100% |
| test/test_concept_handler.py |
TestConceptHandler.test_check_status_other_different_valid_name |
7 |
0 |
0 |
100% |
| test/test_concept_handler.py |
TestConceptHandler.test_fetch_worms_taxon_tree |
6 |
0 |
0 |
100% |
| test/test_concept_handler.py |
TestConceptHandler.test_fetch_worms_taxon_tree_egg |
4 |
0 |
0 |
100% |
| test/test_concept_handler.py |
TestConceptHandler.test_fetch_worms_taxon_tree_no_match |
6 |
0 |
0 |
100% |
| test/test_concept_handler.py |
TestConceptHandler.test_fetch_worms_vernaculars |
6 |
0 |
0 |
100% |
| test/test_concept_handler.py |
TestConceptHandler.test_fetch_worms_vernaculars_egg |
4 |
0 |
0 |
100% |
| test/test_concept_handler.py |
TestConceptHandler.test_fetch_worms_vernaculars_no_eng |
6 |
0 |
0 |
100% |
| test/test_concept_handler.py |
TestConceptHandler.test_fetch_worms_vernaculars_none |
5 |
0 |
0 |
100% |
| test/test_concept_handler.py |
TestConceptHandler.test_fetch_vars_synonyms_simple |
4 |
0 |
0 |
100% |
| test/test_concept_handler.py |
TestConceptHandler.test_fetch_vars_synonyms_complex |
7 |
0 |
0 |
100% |
| test/test_concept_handler.py |
TestConceptHandler.test_fetch_vars_synonyms_egg |
4 |
0 |
0 |
100% |
| test/test_concept_handler.py |
TestConceptHandler.test_fetch_vars_synonyms_none |
4 |
0 |
0 |
100% |
| test/test_concept_handler.py |
(no function) |
56 |
0 |
0 |
100% |
| test/test_functions.py |
TestFunctions.test_get_association |
2 |
0 |
0 |
100% |
| test/test_functions.py |
TestFunctions.test_get_association_none |
2 |
0 |
0 |
100% |
| test/test_functions.py |
TestFunctions.test_get_associations_list |
2 |
0 |
0 |
100% |
| test/test_functions.py |
TestFunctions.test_get_associations_list_none |
2 |
0 |
0 |
100% |
| test/test_functions.py |
TestFunctions.test_grain_size |
3 |
0 |
0 |
100% |
| test/test_functions.py |
TestFunctions.test_grain_size_no_match |
2 |
0 |
0 |
100% |
| test/test_functions.py |
TestFunctions.test_get_date_time |
2 |
0 |
0 |
100% |
| test/test_functions.py |
TestFunctions.test_parse_datetime_micro |
2 |
0 |
0 |
100% |
| test/test_functions.py |
TestFunctions.test_parse_datetime_no_micro |
2 |
0 |
0 |
100% |
| test/test_functions.py |
TestFunctions.test_parse_datetime_fail |
2 |
0 |
0 |
100% |
| test/test_functions.py |
TestFunctions.test_extract_time_no_micro |
2 |
0 |
0 |
100% |
| test/test_functions.py |
TestFunctions.test_extract_time_round_up |
2 |
0 |
0 |
100% |
| test/test_functions.py |
TestFunctions.test_extract_time_round_down |
2 |
0 |
0 |
100% |
| test/test_functions.py |
TestFunctions.test_extract_uuid |
2 |
0 |
0 |
100% |
| test/test_functions.py |
TestFunctions.test_add_meters_no_m |
2 |
0 |
0 |
100% |
| test/test_functions.py |
TestFunctions.test_add_meters_m |
2 |
0 |
0 |
100% |
| test/test_functions.py |
TestFunctions.test_convert_username_to_name |
2 |
0 |
0 |
100% |
| test/test_functions.py |
TestFunctions.test_convert_username_to_name_fail |
2 |
0 |
0 |
100% |
| test/test_functions.py |
TestFunctions.test_translate_substrate_code_same |
2 |
0 |
0 |
100% |
| test/test_functions.py |
TestFunctions.test_translate_substrate_code_tube |
2 |
0 |
0 |
100% |
| test/test_functions.py |
TestFunctions.test_translate_substrate_code_simple |
2 |
0 |
0 |
100% |
| test/test_functions.py |
TestFunctions.test_translate_substrate_code_complex1 |
2 |
0 |
0 |
100% |
| test/test_functions.py |
TestFunctions.test_translate_substrate_code_complex2 |
2 |
0 |
0 |
100% |
| test/test_functions.py |
TestFunctions.test_translate_substrate_code_complex3 |
2 |
0 |
0 |
100% |
| test/test_functions.py |
TestFunctions.test_translate_substrate_code_fail |
2 |
0 |
0 |
100% |
| test/test_functions.py |
TestFunctions.test_collapse_id_records |
3 |
0 |
0 |
100% |
| test/test_functions.py |
TestFunctions.test_collapse_id_records_none |
3 |
0 |
0 |
100% |
| test/test_functions.py |
TestFunctions.test_find_associated_taxa_host_before |
3 |
0 |
0 |
100% |
| test/test_functions.py |
TestFunctions.test_find_associated_taxa_host_same_time |
3 |
0 |
0 |
100% |
| test/test_functions.py |
TestFunctions.test_find_associated_taxa_host_future |
5 |
0 |
0 |
100% |
| test/test_functions.py |
TestFunctions.test_find_associated_taxa_prev_dive |
4 |
0 |
0 |
100% |
| test/test_functions.py |
TestFunctions.test_find_associated_taxa_host_same_concept |
3 |
0 |
0 |
100% |
| test/test_functions.py |
TestFunctions.test_find_associated_taxa_multiple_associates |
3 |
0 |
0 |
100% |
| test/test_functions.py |
TestFunctions.test_find_associated_taxa_upon_not_in_concepts |
4 |
0 |
0 |
100% |
| test/test_functions.py |
TestFunctions.test_find_associated_taxa_upon_over_one_min |
4 |
0 |
0 |
100% |
| test/test_functions.py |
TestFunctions.test_find_associated_taxa_upon_over_five_mins |
4 |
0 |
0 |
100% |
| test/test_functions.py |
(no function) |
41 |
0 |
0 |
100% |
| test/test_timestamp_processor.py |
TestTimestampProcessor.test_init |
2 |
0 |
0 |
100% |
| test/test_timestamp_processor.py |
TestTimestampProcessor.test_init_round_down |
2 |
0 |
0 |
100% |
| test/test_timestamp_processor.py |
TestTimestampProcessor.test_init_round_up |
2 |
0 |
0 |
100% |
| test/test_timestamp_processor.py |
TestTimestampProcessor.test_init_fail |
2 |
0 |
0 |
100% |
| test/test_timestamp_processor.py |
TestTimestampProcessor.test_get_formatted_timestamp |
2 |
0 |
0 |
100% |
| test/test_timestamp_processor.py |
(no function) |
9 |
0 |
0 |
100% |
| util/constants.py |
(no function) |
36 |
0 |
0 |
100% |
| util/functions.py |
get_association |
4 |
0 |
0 |
100% |
| util/functions.py |
get_associations_list |
5 |
0 |
0 |
100% |
| util/functions.py |
grain_size |
4 |
0 |
0 |
100% |
| util/functions.py |
get_date_and_time |
1 |
0 |
0 |
100% |
| util/functions.py |
parse_datetime |
3 |
0 |
0 |
100% |
| util/functions.py |
extract_time |
8 |
1 |
0 |
88% |
| util/functions.py |
extract_uuid |
1 |
0 |
0 |
100% |
| util/functions.py |
add_meters |
3 |
0 |
0 |
100% |
| util/functions.py |
convert_username_to_name |
8 |
2 |
0 |
75% |
| util/functions.py |
translate_substrate_code |
42 |
7 |
0 |
83% |
| util/functions.py |
collapse_id_records |
28 |
4 |
0 |
86% |
| util/functions.py |
find_associated_taxa |
36 |
0 |
0 |
100% |
| util/functions.py |
(no function) |
16 |
0 |
0 |
100% |
| util/terminal_output.py |
Messages.dive_not_found |
1 |
1 |
0 |
0% |
| util/terminal_output.py |
(no function) |
30 |
10 |
0 |
67% |