| annotation / annotation_row.py |
AnnotationRow.__init__ |
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6 |
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| annotation / annotation_row.py |
AnnotationRow.set_simple_static_data |
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21 |
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| annotation / annotation_row.py |
AnnotationRow.set_ancillary_data |
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27 |
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| annotation / annotation_row.py |
AnnotationRow.set_sample_id |
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1 |
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AnnotationRow.set_dive_info |
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21 |
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| annotation / annotation_row.py |
AnnotationRow.set_concept_info |
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26 |
3 |
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| annotation / annotation_row.py |
AnnotationRow.set_media_type |
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3 |
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0 |
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| annotation / annotation_row.py |
AnnotationRow.set_id_comments |
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9 |
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AnnotationRow.set_indv_count_and_cat_abundance |
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10 |
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AnnotationRow.set_size |
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8 |
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| annotation / annotation_row.py |
AnnotationRow.set_condition_comment |
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| annotation / annotation_row.py |
AnnotationRow.set_comments_and_sample |
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30 |
2 |
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| annotation / annotation_row.py |
AnnotationRow.set_cmecs_geo |
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1 |
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0 |
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| annotation / annotation_row.py |
AnnotationRow.set_habitat |
|
32 |
3 |
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AnnotationRow.set_upon |
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20 |
10 |
0 |
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| annotation / annotation_row.py |
AnnotationRow.set_id_ref |
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7 |
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| annotation / annotation_row.py |
AnnotationRow.set_depth |
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6 |
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| annotation / annotation_row.py |
AnnotationRow.set_temperature |
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4 |
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| annotation / annotation_row.py |
AnnotationRow.set_salinity |
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4 |
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| annotation / annotation_row.py |
AnnotationRow.set_oxygen |
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4 |
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| annotation / annotation_row.py |
AnnotationRow.set_image_paths |
|
41 |
11 |
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| annotation / annotation_row.py |
AnnotationRow.set_bounding_box_uuid |
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3 |
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(no function) |
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31 |
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| annotation / timestamp_processor.py |
TimestampProcessor.__init__ |
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4 |
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TimestampProcessor.get_formatted_timestamp |
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1 |
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| annotation / timestamp_processor.py |
(no function) |
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5 |
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| concept / concept.py |
Concept.__init__ |
|
16 |
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0 |
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100% |
| concept / concept.py |
Concept.flatten_taxa_tree |
|
8 |
4 |
0 |
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| concept / concept.py |
Concept.load_from_record |
|
19 |
10 |
0 |
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| concept / concept.py |
Concept.analyze_concept_name |
|
49 |
4 |
0 |
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92% |
| concept / concept.py |
(no function) |
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7 |
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0 |
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| concept / concept_handler.py |
ConceptHandler.__init__ |
|
6 |
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0 |
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| concept / concept_handler.py |
ConceptHandler.fetch_worms |
|
3 |
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0 |
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| concept / concept_handler.py |
ConceptHandler.fetch_worms_aphia_record |
|
34 |
5 |
0 |
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85% |
| concept / concept_handler.py |
ConceptHandler.find_parent |
|
39 |
2 |
0 |
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| concept / concept_handler.py |
ConceptHandler.find_accepted_record |
|
23 |
4 |
0 |
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| concept / concept_handler.py |
ConceptHandler.check_status |
|
21 |
2 |
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| concept / concept_handler.py |
ConceptHandler.check_status.fetch_valid_name_record |
|
7 |
1 |
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86% |
| concept / concept_handler.py |
ConceptHandler.fetch_worms_taxon_tree |
|
11 |
1 |
0 |
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91% |
| concept / concept_handler.py |
ConceptHandler.fetch_worms_vernaculars |
|
14 |
1 |
0 |
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93% |
| concept / concept_handler.py |
ConceptHandler.fetch_vars_synonyms |
|
33 |
3 |
0 |
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91% |
| concept / concept_handler.py |
(no function) |
|
16 |
0 |
0 |
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100% |
| format_and_output.py |
(no function) |
|
199 |
199 |
0 |
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0% |
| test / __init__.py |
(no function) |
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0 |
0 |
0 |
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| test / data_for_tests.py |
(no function) |
|
17 |
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0 |
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| test / test_annotation_row.py |
TestAnnotationRow.test_init |
|
12 |
0 |
0 |
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| test / test_annotation_row.py |
TestAnnotationRow.test_simple_static_data |
|
22 |
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0 |
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| test / test_annotation_row.py |
TestAnnotationRow.test_set_ancillary_data |
|
8 |
0 |
0 |
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| test / test_annotation_row.py |
TestAnnotationRow.test_set_ancillary_data_missing_location |
|
8 |
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0 |
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| test / test_annotation_row.py |
TestAnnotationRow.test_set_ancillary_data_missing_data |
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4 |
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0 |
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| test / test_annotation_row.py |
TestAnnotationRow.test_set_sample_id |
|
3 |
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0 |
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| test / test_annotation_row.py |
TestAnnotationRow.test_set_dive_info |
|
23 |
0 |
0 |
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| test / test_annotation_row.py |
TestAnnotationRow.test_set_concept_info_no_descriptors |
|
23 |
0 |
0 |
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| test / test_annotation_row.py |
TestAnnotationRow.test_set_concept_info_descriptors |
|
23 |
0 |
0 |
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100% |
| test / test_annotation_row.py |
TestAnnotationRow.test_set_media_type |
|
5 |
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0 |
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| test / test_annotation_row.py |
TestAnnotationRow.test_set_media_type_no_name |
|
4 |
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0 |
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| test / test_annotation_row.py |
TestAnnotationRow.test_set_id_comments_maybe |
|
6 |
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0 |
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| test / test_annotation_row.py |
TestAnnotationRow.test_set_id_comments_other |
|
6 |
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0 |
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| test / test_annotation_row.py |
TestAnnotationRow.test_set_id_comments_none |
|
4 |
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0 |
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| test / test_annotation_row.py |
TestAnnotationRow.test_set_indv_count |
|
4 |
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0 |
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100% |
| test / test_annotation_row.py |
TestAnnotationRow.test_set_cat_abundance |
|
4 |
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0 |
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| test / test_annotation_row.py |
TestAnnotationRow.test_set_indv_count_and_cat_abundance_none |
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4 |
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0 |
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| test / test_annotation_row.py |
TestAnnotationRow.test_set_size |
|
7 |
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0 |
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TestAnnotationRow.test_set_size_no_size |
|
7 |
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0 |
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TestAnnotationRow.test_set_size_no_match |
|
7 |
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| test / test_annotation_row.py |
TestAnnotationRow.test_set_condition_comment |
|
6 |
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TestAnnotationRow.test_set_condition_comment_none |
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5 |
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TestAnnotationRow.test_set_condition_comment_damaged |
|
5 |
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0 |
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TestAnnotationRow.test_set_condition_comment_dead |
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5 |
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0 |
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TestAnnotationRow.test_set_comments_simple_remark |
|
3 |
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0 |
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100% |
| test / test_annotation_row.py |
TestAnnotationRow.test_set_comments_simple_size |
|
5 |
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0 |
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100% |
| test / test_annotation_row.py |
TestAnnotationRow.test_set_comments_simple_sample |
|
5 |
0 |
0 |
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100% |
| test / test_annotation_row.py |
TestAnnotationRow.test_set_comments_and_sample_none |
|
3 |
0 |
0 |
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100% |
| test / test_annotation_row.py |
TestAnnotationRow.test_set_comments_and_sample |
|
5 |
0 |
0 |
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100% |
| test / test_annotation_row.py |
TestAnnotationRow.test_set_comments_old_vars |
|
5 |
0 |
0 |
|
100% |
| test / test_annotation_row.py |
TestAnnotationRow.test_set_cmecs_geo |
|
3 |
0 |
0 |
|
100% |
| test / test_annotation_row.py |
TestAnnotationRow.test_set_habitat_s1 |
|
5 |
0 |
0 |
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100% |
| test / test_annotation_row.py |
TestAnnotationRow.test_set_habitat_s1_none |
|
6 |
0 |
0 |
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| test / test_annotation_row.py |
TestAnnotationRow.test_set_habitat_s1_fail |
|
5 |
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0 |
|
100% |
| test / test_annotation_row.py |
TestAnnotationRow.test_set_habitat_one_s2 |
|
5 |
0 |
0 |
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100% |
| test / test_annotation_row.py |
TestAnnotationRow.test_set_habitat_multiple_s2 |
|
5 |
0 |
0 |
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100% |
| test / test_annotation_row.py |
TestAnnotationRow.test_set_habitat_s2_fail |
|
5 |
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0 |
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100% |
| test / test_annotation_row.py |
TestAnnotationRow.test_set_habitat_comment |
|
7 |
0 |
0 |
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100% |
| test / test_annotation_row.py |
TestAnnotationRow.test_set_upon_not_creature |
|
4 |
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0 |
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100% |
| test / test_annotation_row.py |
TestAnnotationRow.test_set_upon_is_creature |
|
4 |
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0 |
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100% |
| test / test_annotation_row.py |
TestAnnotationRow.test_set_upon_no_upon |
|
4 |
0 |
0 |
|
100% |
| test / test_annotation_row.py |
TestAnnotationRow.test_set_id_ref |
|
5 |
0 |
0 |
|
100% |
| test / test_annotation_row.py |
TestAnnotationRow.test_set_id_ref_none |
|
5 |
0 |
0 |
|
100% |
| test / test_annotation_row.py |
TestAnnotationRow.test_set_id_ref_blank |
|
5 |
0 |
0 |
|
100% |
| test / test_annotation_row.py |
TestAnnotationRow.test_set_depth |
|
7 |
0 |
0 |
|
100% |
| test / test_annotation_row.py |
TestAnnotationRow.test_set_depth_missing |
|
7 |
0 |
0 |
|
100% |
| test / test_annotation_row.py |
TestAnnotationRow.test_set_temperature |
|
5 |
0 |
0 |
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100% |
| test / test_annotation_row.py |
TestAnnotationRow.test_set_temperature_none |
|
5 |
0 |
0 |
|
100% |
| test / test_annotation_row.py |
TestAnnotationRow.test_set_salinity |
|
5 |
0 |
0 |
|
100% |
| test / test_annotation_row.py |
TestAnnotationRow.test_set_salinity_none |
|
5 |
0 |
0 |
|
100% |
| test / test_annotation_row.py |
TestAnnotationRow.test_set_oxygen |
|
5 |
0 |
0 |
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100% |
| test / test_annotation_row.py |
TestAnnotationRow.test_set_oxygen_none |
|
5 |
0 |
0 |
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100% |
| test / test_annotation_row.py |
TestAnnotationRow.test_set_image_paths_one_no_hl |
|
4 |
0 |
0 |
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100% |
| test / test_annotation_row.py |
TestAnnotationRow.test_set_image_paths_one_hl_best |
|
4 |
0 |
0 |
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100% |
| test / test_annotation_row.py |
TestAnnotationRow.test_set_image_paths_one_hl_dense |
|
4 |
0 |
0 |
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100% |
| test / test_annotation_row.py |
TestAnnotationRow.test_set_image_paths_multiple |
|
4 |
0 |
0 |
|
100% |
| test / test_annotation_row.py |
TestAnnotationRow.test_old_vars_image_paths |
|
4 |
0 |
0 |
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100% |
| test / test_annotation_row.py |
TestAnnotationRow.test_set_bounding_box_uuid_single |
|
3 |
0 |
0 |
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100% |
| test / test_annotation_row.py |
TestAnnotationRow.test_set_bounding_box_uuid_none |
|
3 |
0 |
0 |
|
100% |
| test / test_annotation_row.py |
(no function) |
|
64 |
0 |
0 |
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100% |
| test / test_concept.py |
TestConcept.test_init |
|
16 |
0 |
0 |
|
100% |
| test / test_concept.py |
TestConcept.test_flatten_tree |
|
3 |
0 |
0 |
|
100% |
| test / test_concept.py |
TestConcept.test_analyze_concept_name_simple |
|
6 |
0 |
0 |
|
100% |
| test / test_concept.py |
TestConcept.test_analyze_concept_name_cf_end |
|
6 |
0 |
0 |
|
100% |
| test / test_concept.py |
TestConcept.test_analyze_concept_name_slash |
|
6 |
0 |
0 |
|
100% |
| test / test_concept.py |
TestConcept.test_analyze_concept_name_cf_mid |
|
6 |
0 |
0 |
|
100% |
| test / test_concept.py |
TestConcept.test_analyze_concept_name_sp_one |
|
7 |
0 |
0 |
|
100% |
| test / test_concept.py |
TestConcept.test_analyze_concept_name_sp_two |
|
7 |
0 |
0 |
|
100% |
| test / test_concept.py |
TestConcept.test_analyze_concept_name_nr_one |
|
6 |
0 |
0 |
|
100% |
| test / test_concept.py |
TestConcept.test_analyze_concept_name_nr_two |
|
6 |
0 |
0 |
|
100% |
| test / test_concept.py |
TestConcept.test_analyze_concept_name_aff_one |
|
6 |
0 |
0 |
|
100% |
| test / test_concept.py |
TestConcept.test_analyze_concept_name_aff_two |
|
6 |
0 |
0 |
|
100% |
| test / test_concept.py |
TestConcept.test_analyze_concept_name_new_sp |
|
7 |
0 |
0 |
|
100% |
| test / test_concept.py |
TestConcept.test_analyze_concept_name_new_sub_sp |
|
7 |
0 |
0 |
|
100% |
| test / test_concept.py |
TestConcept.test_analyze_concept_name_new_gen |
|
7 |
0 |
0 |
|
100% |
| test / test_concept.py |
TestConcept.test_load_from_record |
|
12 |
0 |
0 |
|
100% |
| test / test_concept.py |
(no function) |
|
20 |
0 |
0 |
|
100% |
| test / test_concept_handler.py |
MockResponse.__init__ |
|
8 |
0 |
0 |
|
100% |
| test / test_concept_handler.py |
MockResponse.json |
|
40 |
3 |
0 |
|
92% |
| test / test_concept_handler.py |
mocked_requests_get |
|
1 |
0 |
0 |
|
100% |
| test / test_concept_handler.py |
TestConceptHandler.test_init |
|
6 |
0 |
0 |
|
100% |
| test / test_concept_handler.py |
TestConceptHandler.test_fetch_worms_aphia_record_simple |
|
7 |
0 |
0 |
|
100% |
| test / test_concept_handler.py |
TestConceptHandler.test_fetch_worms_aphia_record_egg |
|
10 |
0 |
0 |
|
100% |
| test / test_concept_handler.py |
TestConceptHandler.test_fetch_worms_aphia_record_no_match |
|
4 |
0 |
0 |
|
100% |
| test / test_concept_handler.py |
TestConceptHandler.test_fetch_worms_aphia_record_extra_bits |
|
7 |
0 |
0 |
|
100% |
| test / test_concept_handler.py |
TestConceptHandler.test_find_parent_simple |
|
3 |
0 |
0 |
|
100% |
| test / test_concept_handler.py |
TestConceptHandler.test_find_parent_simple_fail |
|
3 |
0 |
0 |
|
100% |
| test / test_concept_handler.py |
TestConceptHandler.test_find_parent_slash_name |
|
3 |
0 |
0 |
|
100% |
| test / test_concept_handler.py |
TestConceptHandler.test_find_parent_slash_name_fail |
|
3 |
0 |
0 |
|
100% |
| test / test_concept_handler.py |
TestConceptHandler.test_find_accepted_record |
|
7 |
0 |
0 |
|
100% |
| test / test_concept_handler.py |
TestConceptHandler.test_find_accepted_record_no_match |
|
7 |
0 |
0 |
|
100% |
| test / test_concept_handler.py |
TestConceptHandler.test_check_status_accepted |
|
6 |
0 |
0 |
|
100% |
| test / test_concept_handler.py |
TestConceptHandler.test_check_status_unaccepted |
|
7 |
0 |
0 |
|
100% |
| test / test_concept_handler.py |
TestConceptHandler.test_check_status_other_same_valid_name |
|
6 |
0 |
0 |
|
100% |
| test / test_concept_handler.py |
TestConceptHandler.test_check_status_other_different_valid_name |
|
7 |
0 |
0 |
|
100% |
| test / test_concept_handler.py |
TestConceptHandler.test_fetch_worms_taxon_tree |
|
6 |
0 |
0 |
|
100% |
| test / test_concept_handler.py |
TestConceptHandler.test_fetch_worms_taxon_tree_egg |
|
4 |
0 |
0 |
|
100% |
| test / test_concept_handler.py |
TestConceptHandler.test_fetch_worms_taxon_tree_no_match |
|
6 |
0 |
0 |
|
100% |
| test / test_concept_handler.py |
TestConceptHandler.test_fetch_worms_vernaculars |
|
6 |
0 |
0 |
|
100% |
| test / test_concept_handler.py |
TestConceptHandler.test_fetch_worms_vernaculars_egg |
|
4 |
0 |
0 |
|
100% |
| test / test_concept_handler.py |
TestConceptHandler.test_fetch_worms_vernaculars_no_eng |
|
6 |
0 |
0 |
|
100% |
| test / test_concept_handler.py |
TestConceptHandler.test_fetch_worms_vernaculars_none |
|
5 |
0 |
0 |
|
100% |
| test / test_concept_handler.py |
TestConceptHandler.test_fetch_vars_synonyms_simple |
|
4 |
0 |
0 |
|
100% |
| test / test_concept_handler.py |
TestConceptHandler.test_fetch_vars_synonyms_complex |
|
7 |
0 |
0 |
|
100% |
| test / test_concept_handler.py |
TestConceptHandler.test_fetch_vars_synonyms_egg |
|
4 |
0 |
0 |
|
100% |
| test / test_concept_handler.py |
TestConceptHandler.test_fetch_vars_synonyms_none |
|
4 |
0 |
0 |
|
100% |
| test / test_concept_handler.py |
(no function) |
|
56 |
0 |
0 |
|
100% |
| test / test_functions.py |
TestFunctions.test_get_association |
|
2 |
0 |
0 |
|
100% |
| test / test_functions.py |
TestFunctions.test_get_association_none |
|
2 |
0 |
0 |
|
100% |
| test / test_functions.py |
TestFunctions.test_get_associations_list |
|
2 |
0 |
0 |
|
100% |
| test / test_functions.py |
TestFunctions.test_get_associations_list_none |
|
2 |
0 |
0 |
|
100% |
| test / test_functions.py |
TestFunctions.test_grain_size |
|
3 |
0 |
0 |
|
100% |
| test / test_functions.py |
TestFunctions.test_grain_size_no_match |
|
2 |
0 |
0 |
|
100% |
| test / test_functions.py |
TestFunctions.test_get_date_time |
|
2 |
0 |
0 |
|
100% |
| test / test_functions.py |
TestFunctions.test_parse_datetime_micro |
|
2 |
0 |
0 |
|
100% |
| test / test_functions.py |
TestFunctions.test_parse_datetime_no_micro |
|
2 |
0 |
0 |
|
100% |
| test / test_functions.py |
TestFunctions.test_parse_datetime_fail |
|
2 |
0 |
0 |
|
100% |
| test / test_functions.py |
TestFunctions.test_extract_time_no_micro |
|
2 |
0 |
0 |
|
100% |
| test / test_functions.py |
TestFunctions.test_extract_time_round_up |
|
2 |
0 |
0 |
|
100% |
| test / test_functions.py |
TestFunctions.test_extract_time_round_down |
|
2 |
0 |
0 |
|
100% |
| test / test_functions.py |
TestFunctions.test_extract_uuid |
|
2 |
0 |
0 |
|
100% |
| test / test_functions.py |
TestFunctions.test_add_meters_no_m |
|
2 |
0 |
0 |
|
100% |
| test / test_functions.py |
TestFunctions.test_add_meters_m |
|
2 |
0 |
0 |
|
100% |
| test / test_functions.py |
TestFunctions.test_convert_username_to_name |
|
2 |
0 |
0 |
|
100% |
| test / test_functions.py |
TestFunctions.test_convert_username_to_name_fail |
|
2 |
0 |
0 |
|
100% |
| test / test_functions.py |
TestFunctions.test_translate_substrate_code_same |
|
2 |
0 |
0 |
|
100% |
| test / test_functions.py |
TestFunctions.test_translate_substrate_code_tube |
|
2 |
0 |
0 |
|
100% |
| test / test_functions.py |
TestFunctions.test_translate_substrate_code_simple |
|
2 |
0 |
0 |
|
100% |
| test / test_functions.py |
TestFunctions.test_translate_substrate_code_complex1 |
|
2 |
0 |
0 |
|
100% |
| test / test_functions.py |
TestFunctions.test_translate_substrate_code_complex2 |
|
2 |
0 |
0 |
|
100% |
| test / test_functions.py |
TestFunctions.test_translate_substrate_code_complex3 |
|
2 |
0 |
0 |
|
100% |
| test / test_functions.py |
TestFunctions.test_translate_substrate_code_fail |
|
2 |
0 |
0 |
|
100% |
| test / test_functions.py |
TestFunctions.test_collapse_id_records |
|
3 |
0 |
0 |
|
100% |
| test / test_functions.py |
TestFunctions.test_collapse_id_records_none |
|
3 |
0 |
0 |
|
100% |
| test / test_functions.py |
TestFunctions.test_find_associated_taxa_host_before |
|
3 |
0 |
0 |
|
100% |
| test / test_functions.py |
TestFunctions.test_find_associated_taxa_host_same_time |
|
3 |
0 |
0 |
|
100% |
| test / test_functions.py |
TestFunctions.test_find_associated_taxa_host_future |
|
5 |
0 |
0 |
|
100% |
| test / test_functions.py |
TestFunctions.test_find_associated_taxa_prev_dive |
|
4 |
0 |
0 |
|
100% |
| test / test_functions.py |
TestFunctions.test_find_associated_taxa_host_same_concept |
|
3 |
0 |
0 |
|
100% |
| test / test_functions.py |
TestFunctions.test_find_associated_taxa_multiple_associates |
|
3 |
0 |
0 |
|
100% |
| test / test_functions.py |
TestFunctions.test_find_associated_taxa_upon_not_in_concepts |
|
4 |
0 |
0 |
|
100% |
| test / test_functions.py |
TestFunctions.test_find_associated_taxa_upon_over_one_min |
|
4 |
0 |
0 |
|
100% |
| test / test_functions.py |
TestFunctions.test_find_associated_taxa_upon_over_five_mins |
|
4 |
0 |
0 |
|
100% |
| test / test_functions.py |
(no function) |
|
41 |
0 |
0 |
|
100% |
| test / test_timestamp_processor.py |
TestTimestampProcessor.test_init |
|
2 |
0 |
0 |
|
100% |
| test / test_timestamp_processor.py |
TestTimestampProcessor.test_init_round_down |
|
2 |
0 |
0 |
|
100% |
| test / test_timestamp_processor.py |
TestTimestampProcessor.test_init_round_up |
|
2 |
0 |
0 |
|
100% |
| test / test_timestamp_processor.py |
TestTimestampProcessor.test_init_fail |
|
2 |
0 |
0 |
|
100% |
| test / test_timestamp_processor.py |
TestTimestampProcessor.test_get_formatted_timestamp |
|
2 |
0 |
0 |
|
100% |
| test / test_timestamp_processor.py |
(no function) |
|
9 |
0 |
0 |
|
100% |
| util / constants.py |
(no function) |
|
36 |
0 |
0 |
|
100% |
| util / functions.py |
get_association |
|
4 |
0 |
0 |
|
100% |
| util / functions.py |
get_associations_list |
|
5 |
0 |
0 |
|
100% |
| util / functions.py |
grain_size |
|
4 |
0 |
0 |
|
100% |
| util / functions.py |
get_date_and_time |
|
1 |
0 |
0 |
|
100% |
| util / functions.py |
parse_datetime |
|
3 |
0 |
0 |
|
100% |
| util / functions.py |
extract_time |
|
8 |
1 |
0 |
|
88% |
| util / functions.py |
extract_uuid |
|
1 |
0 |
0 |
|
100% |
| util / functions.py |
add_meters |
|
3 |
0 |
0 |
|
100% |
| util / functions.py |
convert_username_to_name |
|
10 |
3 |
0 |
|
70% |
| util / functions.py |
translate_substrate_code |
|
42 |
7 |
0 |
|
83% |
| util / functions.py |
collapse_id_records |
|
28 |
4 |
0 |
|
86% |
| util / functions.py |
find_associated_taxa |
|
36 |
0 |
0 |
|
100% |
| util / functions.py |
(no function) |
|
16 |
0 |
0 |
|
100% |
| util / terminal_output.py |
Messages.dive_not_found |
|
1 |
1 |
0 |
|
0% |
| util / terminal_output.py |
(no function) |
|
30 |
10 |
0 |
|
67% |